In the video, I mentioned that you don’t have to epoxy in the ruler. I would, personally, as it’ll take one less complication out of future jigs. Whatever you do, both jigs should be aligned with the bottom edge.
To line up the ruler, place it as far as you can so that the outer tooth of your bandsaw blade barely misses it.
Now we’ll add epoxy and clamps, being careful to make sure that there isn’t any epoxy on the surface that would permanently bond to your clamps.